GgaALTA0003725-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2676676-2677050:-
Coord C1 exon
chr17:2676935-2677050
Coord A exon
chr17:2676833-2676835
Coord C2 exon
chr17:2676676-2676832
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ACTGATTGTTCCATATGTAGCAG
3' ss Score
4.9
Exon sequences
Seq C1 exon
ATTTGCCTGCTCCAGAAGGTCTGAAATTCAAATCTGTTAGAGAAACGTCTGTCCAGGTGGAATGGGATCCTCTGAGCATTTCCTTTGATGGCTGGGAGCTGGTCTTTCGTAATATG
Seq A exon
CAG
Seq C2 exon
AAAAAGGATGATAATGGAGACATAACCAGCAGCTTGAAAAGGCCGGAGACATCATATATGCAGCCAGGATTGGCACCAGGACAACAGTATAATGTATCCCTTCATATAGTGAAAAACAATACCAGAGGACCAGGGCTATCCCGAGTGATAACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-10-7,10-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(43.4=92.3)
A:
NA
C2:
PF0004116=fn3=PD(54.2=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGGAATGGGATCCTCT
R:
GGCCTTTTCAAGCTGCTGGTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]