GgaALTA0003751-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007169 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr2:14082605-14084225:+
Coord C1 exon
chr2:14082605-14082764
Coord A exon
NA
Coord C2 exon
chr2:14084052-14084225
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGCTTTTTTCGCTTCAGCAGGAT
3' ss Score
7.65
Exon sequences
Seq C1 exon
GTATAATTTGGGTGATTACAGTGGAGAGATTGTGTCTGAGGTCATGGCACAGCGGCAGCCAATGAAACCTACCTATGCTATTCCCATCATTCCTGTGACTAACAGCAGTCCTTTCAAACATCAAGAAACTATGGAACTGAAAGAATATAAAGTTAACAAA
Seq A exon
NA
Seq C2 exon
GATAAATCTGATGTTATTCGGCCTAAAAGAAAGTATGAGAAGAAGCCAAAAGTCTTACCTTCGTCTGCTGCTGCTACTCCTCAACAGACGAGTCCTGCTGCACTGCCAGTCTTCAATGCTAAAGATTTGAATCAGTATGATTTCCCTAGCTCGGATGAAGAACCCCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169-11-12,11-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTAACAGCAGTCCTTTCA
R:
TCTCATACTTTCTTTTAGGCCGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]