GgaALTA0003756-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007181 | PGS1
Description
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHN9]
Coordinates
chr18:10098325-10099668:-
Coord C1 exon
chr18:10099526-10099668
Coord A exon
chr18:10098426-10098471
Coord C2 exon
chr18:10098325-10098425
Length
46 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCTTTTTCTTTTGTCTTTAGGTT
3' ss Score
12.01
Exon sequences
Seq C1 exon
GAGCAGGAGCAGCTTTACCTCTGCTCAGGTGTGGTGTCATCATCAACGTTTGAGCAGCCAAGTCGGCATGTGAAGCTGTGGGTGAAATTGGTAACGCCTCTGATCAAGAATTTCTTTTGAAAGAAGCAGAGTTGCAGCTTTGG
Seq A exon
GTTAAAGGTCCAGACGTAAGTGGGACCTCGCATCCGTGTCTTATAG
Seq C2 exon
ACAGGACATTCGTAGATGTTCTTGGTGTCCATGCGGTCCACGGGGATGGCTCTGATGAAGATGACTGGCATCATGGGCGTCAGCTCCTTCAGCCGAGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181-23-20,23-19,23-18,23-17-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(3.2=12.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGTTTGAGCAGCCAAGT
R:
CCGCATGGACACCAAGAACAT
Band lengths:
137-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]