GgaALTA0003832-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9595899-9596384:+
Coord C1 exon
chr15:9595899-9596069
Coord A exon
chr15:9596325-9596330
Coord C2 exon
chr15:9596331-9596384
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
TTATATATTTTATATTTAAGTTA
3' ss Score
6.25
Exon sequences
Seq C1 exon
GAATATCAAGCTCAAGTAGAAGAAATGAGGTTGATGATGAATCAATTGGAAGAGGATCTTATTTCAGCTCGCAGGCGTAGTGATCTTTATGAATCGGAGTTGAGAGAGTCCCGAATGGCTGCTGAAGAATTTAAACGTAAAGCTACTGAATGTCACAACAAATTGCAAAAG
Seq A exon
TTACAG
Seq C2 exon
GTTAAAGATCAAGGAAAAAGCGAAGCAGGAGAATTGTATTGCAAATTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-30-26,30-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAATGGCTGCTGAAGAAT
R:
TCTCCTGCTTCGCTTTTTCCT
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]