GgaALTA0004039-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11044297-11044656:-
Coord C1 exon
chr15:11044539-11044656
Coord A exon
NA
Coord C2 exon
chr15:11044297-11044363
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
GTGGCACTTTGTCCCTGCAGGCG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GGAGCGTGCAGTCTGCCAAAGGAGAGGCCAGTGATGAAGATGAAGAGACGGAGTATTTTGATGCCATGGAGGATGCACCAGCTTTTATCACTGTAACCGCAGACCCCAAGCACCACAG
Seq A exon
NA
Seq C2 exon
GCGTTCGGGCAGTAACCTGAGTGGGGCCAGCGAGGGCCACCCTGAGGACTGGAACCTGGAGGACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-8-6,8-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGGATGCACCAGCTTT
R:
GTCCTCCAGGTTCCAGTCCTC
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]