GgaALTA0004041-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13229948-13231247:-
Coord C1 exon
chr14:13231194-13231247
Coord A exon
chr14:13230043-13230072
Coord C2 exon
chr14:13229948-13230042
Length
30 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTTGGGGGTGCATTTGCAGGAA
3' ss Score
5.91
Exon sequences
Seq C1 exon
ATGGGCCTATGTCCATGACAACTGTGCCTATAAGTCGTATGCAGGTTTCTCAAG
Seq A exon
GAATGAATCAGTTTAACCCCATGTCCATAG
Seq C2 exon
GGAATGTACAGATGCCACAAGCACCCATGGGACCCCGTGCAGCTTCTCCAATGAACCATCCTGTACAGATGAACAACATGGGCGCTGTTCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCTATGTCCATGACAAC
R:
ATGGTTCATTGGAGAAGCTGCA
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]