GgaALTA0004043-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13215945-13221318:-
Coord C1 exon
chr14:13221230-13221318
Coord A exon
chr14:13216026-13216055
Coord C2 exon
chr14:13215945-13216025
Length
30 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TGTGTGTTGGGCTGGACCAGTTC
3' ss Score
2.67
Exon sequences
Seq C1 exon
TATGAGTTTTCTCCACAGACCTTGTGCTGCTATGGCAAGCAGCTGTGTACTATCCCTCGTGATGCTGCCTATTACAGCTACCAGAATAG
Seq A exon
TTCACCCAAATATGGCCTTCTTGCTGACAG
Seq C2 exon
GTATCACTTCTGTGAGAAGTGTTTCACTGAAATCCAGGGGGAGAATGTCACCCTGGGTGATGACCCTTCCCAGCCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-19-25,19-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGCAAGCAGCTGTGTA
R:
GGTGACATTCTCCCCCTGGAT
Band lengths:
113-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]