GgaALTA0004052-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007786 | DOK5
Description
NA
Coordinates
chr20:12226399-12226733:-
Coord C1 exon
chr20:12226619-12226733
Coord A exon
chr20:12226519-12226539
Coord C2 exon
chr20:12226399-12226518
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGTATTATACCTACACACAGATT
3' ss Score
5.03
Exon sequences
Seq C1 exon
GTCACAGAGCTCAATAATGTGAAGAATATATCACGAATGCCGAAGAGCACAAAGAAGCATGCTGTTGGGATTTATTTTAATGATGACACCTCTAAAACTTTTGCTTGTGAGTCAG
Seq A exon
ATTTTCTGGGCATTTATACAG
Seq C2 exon
AACTTGAGGCAGATGAGTGGTGCAAGGTATTGCAGATGGAGTGTCTTGGGACACGAATTAATGACATTAGCCTTGGAGAGCCTGACTTGTTGGCATCGGGAGTGGAGAGGGAGCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007786-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.5=100)
A:
NA
C2:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATGCCGAAGAGCACAAA
R:
GCACCACTCATCTGCCTCAAG
Band lengths:
106-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]