GgaALTA0004054-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007786 | DOK5
Description
docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
Coordinates
chr20:12598820-12600919:-
Coord C1 exon
chr20:12600799-12600919
Coord A exon
chr20:12598921-12598923
Coord C2 exon
chr20:12598820-12598920
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTTTTTCCCCCGGCACACAGCAG
3' ss Score
4.06
Exon sequences
Seq C1 exon
CTTCAGATGAAGATGAGCGAGAGAGCAGTGTCCCTCAGCACCATGGTGCCCCTGCCCCGCAGTGCCTACTGGCAGCACATCACACGGCAGCACAGCACCGGCCAGCTCTATGGCCTGCAAG
Seq A exon
CAG
Seq C2 exon
ATGTTTCAAGCCCTGTGAAGCTCCATCGGACAGACACGTTTCCAGTCTACAGATCAGACCATCGATAAAGGGCTGCCAAGAACTTTACAAACTCTTTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007786-21-21,21-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTGGCAGCACATCACAC
R:
TGTCTGTCCGATGGAGCTTCA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]