GgaALTA0004362-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18518255-18519925:+
Coord C1 exon
chr12:18518255-18518394
Coord A exon
NA
Coord C2 exon
chr12:18519873-18519925
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
GATACTTTTGCTGATTTAAGGAG
3' ss Score
3.75
Exon sequences
Seq C1 exon
AACTGATTGCTGAAGAAATGGAGGAAGAGAATAAAGAGCATACGTGTGAGACGTTACTGATGTGCATTGTTACTGTACTGAGTCATGGGCTCAGGAGTGGGGGTGGAGTAGGTGATGTGCTCAGGAAACCATCCAAAGAG
Seq A exon
NA
Seq C2 exon
GAGTGAAAAACAGAAGAAAGAAGAGATTTTAAAAACAACTTGCTTTATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-76-84,76-83-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.8=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(11.2=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATTGCTGAAGAAATGGAGGA
R:
TCTCTTCTTTCTTCTGTTTTTCACTC
Band lengths:
165-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]