GgaALTA0004588-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008697 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr6:25652960-25654405:+
Coord C1 exon
chr6:25652960-25653039
Coord A exon
chr6:25653724-25653825
Coord C2 exon
chr6:25653826-25654405
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GCTGCCTTTTCCCTCTGCAGCAG
3' ss Score
9.63
Exon sequences
Seq C1 exon
AAACCAGGTAAGAACGTTGCTGCTATCATCCAGGACATCCACTCACAGAGGGAGAGGGACCTGCTGCGTGAGGCAGACAG
Seq A exon
CAGGTATGGCACAGAGAGGCCCCGCTCTCGCAGCCCCATAAGCCGTTCCTTGTCGCCCCGATCCCACACTCCCAGCTTTACTTCCTGCAGTTCACCCCGCAG
Seq C2 exon
CCCGATGGGGACCAGCAGGACCGACTGGGGAAATGGAAGAGAGTCGTGGGATCAGTCCCCGTATTCTCGACGGGAAGAAGAAAGAGAAAGCAGAGAATGGCGAGAGAATGGGGATGAGAAGAGAGACAGGACTGACACGTGGGTACACGAGAGGAAACATTATTCCCGACAGCTAGACAAATTTGACTTGGATGAACGGATTGAAGGAGGCAGAGGGCACAGAGAAAAATATGGAAGGAGTGGTTCTCCTGGCTCCCTCCACCCTTTGTCTGGCTACAAGAGCAGGGAAGATGACTATTACCGAAAAGCCTCTAAGTCAAAATCTGACAAATTTCAGAGGCAGGAGTTTTCTGGGCGATCTAAGAGAAAGGAAGAGGCAAAGTTCAGGGAACACAGGCATTCTTACAGCGAGGACGCTGCTAGGGAGGAGACGGCTGAACAGAAGCATAACAAAGTCTCTGAGAGCTCCAGGCAGAAACAAAGCGATAAGAATAAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008697-8-9,8-8,8-7,8-6-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACAGAGGGAGAGGGAC
R:
CTGCCTCCTTCAATCCGTTCA
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]