GgaALTA0004689-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000008932 | F1NV62_CHICK
Description
NA
Coordinates
chr17:1309664-1310050:-
Coord C1 exon
chr17:1309940-1310050
Coord A exon
chr17:1309799-1309845
Coord C2 exon
chr17:1309664-1309798
Length
47 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCTGCTGTTCTCTGGGCCAGGGA
3' ss Score
7.79
Exon sequences
Seq C1 exon
GCCTTTGCTGGGTTCTACTACACCTTCTCCTTCCTGAACCTGACCGGCCAGCAGTCTCTAAGCCATGTCAATGCCACAGTCTGGGACTTCTGCAACAAGAACTGGTCCGAG
Seq A exon
GGAGGGTTTTGTTCCTCATTTTGCTGTGTCCCCTGATGGGTCTGAAG
Seq C2 exon
CTGGTGGAGACCTTCCCACAGAATAAGGAGCACCTACACACATACTGCGTGGTGGGACTTTACATCTTGACACTGCTGGTCGATGGCTATAAGTTTGATGAGCACACGTGGAGCAACATCCACTTCAGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(8.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAAGAACTGGTCCGAG
R:
GAAGTGGATGTTGCTCCACGT
Band lengths:
147-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]