GgaALTA0004796-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chrE64_random:54026-54868:+
Coord C1 exon
chrE64_random:54026-54355
Coord A exon
chrE64_random:54539-54723
Coord C2 exon
chrE64_random:54724-54868
Length
185 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CACCCCTCTCACATTTTCAGACT
3' ss Score
9.14
Exon sequences
Seq C1 exon
TGACAGACACCTCAAAACCCAACTTCCTGCGGCTAGTGAGTGGCCCCAACCGCTGTGCTGGCAGAGTGGAGGTGCTGCATGATGGGCAGTGGGGCACAGTGTGCGATGATGGCTGGAACCTCCAGGCTGCCACTGTGGTGTGTCGGCAGCTGAACTGCGGCAGGGCTGAGTCAGCCCCCAGCGGTGCTCGCTTTGGGCAAGGCACTGGGCGTATCTGGCTGGATGACGTGAACTGTGCTGGGACTGAGGATGCCCTTCACCAGTGTCGAGCCCGTCCATGGGGACTGCATAACTGCAACCACAGAGAAGATGCTGGCGTGGTTTGCTCAG
Seq A exon
ACTCACAATTAGAGATTACAGCCAAAGTGCGGCTGGTGGATGGTCCACACCGCTGTGCCGGGAGGTTGGAGGTGTTTCAGAACGAGAGATGGGGGACCGTGTGTGGCAACGGCTGGGACATGAATGACGCCATAGTGGTGTGCCGGCAGCTGGGCTGTGGCATTGCTCTCTCGGCTCCTGTCCAG
Seq C2 exon
GCTCACTTCGGCCAAGGGTCAGATCCCATCTGGATGAACAGAGTGTCCTGCATCGGGACAGAAAGTTCCATTTCAGAATGCTTGTCGTCTCCATGGGGAATCCAACTGTGCACCCACATGGATGATGCCGGTGTGGAATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103-28-32,28-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATCTGGCTGGATGACGTG
R:
CATCATCCATGTGGGTGCACA
Band lengths:
248-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]