GgaALTA0004810-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009151 | FCN3
Description
NA
Coordinates
chr17:658467-660450:+
Coord C1 exon
chr17:658467-658502
Coord A exon
chr17:660358-660414
Coord C2 exon
chr17:660415-660450
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
AGAAGAAAACGTTGTTGCAGGAG
3' ss Score
1.11
Exon sequences
Seq C1 exon
GAGCAGCTGGAGACCCTGGATTGCCAGGACCAAAAG
Seq A exon
GAGAAGGAAGGACCAGGTGTGGAAGGCAGAGAGAAATCCGTGGTGTTTGCCCAACAG
Seq C2 exon
GAGCAAAAGGAGAGCCAGGATTTCCAGAACCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.3=100),PF0014713=Fibrinogen_C=PU(0.5=7.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGAGACCCTGGATTG
R:
CAAAGGTTCTGGAAATCCTGGCT
Band lengths:
68-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]