GgaALTA0004865-4/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16926742-16929155:-
Coord C1 exon
chr7:16929081-16929155
Coord A exon
chr7:16926843-16927241
Coord C2 exon
chr7:16926742-16926842
Length
399 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AAAGCAATTTGTCCTTCCAGGTA
3' ss Score
8.17
Exon sequences
Seq C1 exon
GTTGAATGAGAAGCTGCTGCTTGACAAAATGGGGAATGTCTTGCACATCCTCTTCAATTGAAGGTTTCTGACTGG
Seq A exon
GTAGTAAACGTATTTCCCTAAAATGAGCCCAGGCTGATGCAGATGTGATTAACTGTTATTAGACAATACTGAAACACACAGCATCTTAACTTTGATATCCTTTAAATATTTTAATATGGGAATGGGAATGCTGCTCCTCTTCCAAGTATCGCTTGTGTGATGTACTGACTTACTGGTATTGCTTCCTGTATTTAAGACGTTACCTTTTATTCACAGACTGTCTGCGTTACAATGGAGTATTCAGATACCAGTCTGTGATCTCTGACAAATATTTGTATCTTGTGTGAAGCATGAAAGATCCTGAGTGTCACAAAAATGCAGATATCTGATATTCTTTTTCTGCTGTGGGTGCTACAGGTTGACATCTCTGTCTAAGATTAGCTTTTTCCTCATCTAAAG
Seq C2 exon
TAATCCAGGTATCTCCGTAGAAGAACAGTGACCTTCACGTAGAAGATAATACCGCAAGATTGGAAACAGAATAACATACTAAAATAACTGGCAAAGACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-34-32,34-31,34-30,34-29-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]