GgaALTA0004876-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009273 | F1P4U7_CHICK
Description
NA
Coordinates
chr7:17425217-17426017:-
Coord C1 exon
chr7:17425924-17426017
Coord A exon
NA
Coord C2 exon
chr7:17425217-17425317
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCTCTCTTTAATTTCAGCAGTTC
3' ss Score
5
Exon sequences
Seq C1 exon
AAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAGCGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAG
Seq A exon
NA
Seq C2 exon
TTCCTCAGCGATCGAGGAAAAAGAGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009273-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAGGAGAAGAAAGTGAC
R:
TTTTCCTCGATCGCTGAGGAA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]