GgaALTA0004981-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19797687-19802256:-
Coord C1 exon
chr9:19802128-19802256
Coord A exon
chr9:19797816-19797818
Coord C2 exon
chr9:19797687-19797815
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCTTTTTGTTTTTCTTAAAGCAG
3' ss Score
6.99
Exon sequences
Seq C1 exon
CTTGTCCACCAAACACGTATGGCCAGAGTTGCAGCCAAGCCTGTCGCTGCCGTGCTGAGGAGGACTGTCACCCCATCACTGGGCGGTGCGTGTGCCGCCTGGGGTACCACGGGGCCCAGTGTGACCGCC
Seq A exon
CAG
Seq C2 exon
GGTGTCCAGAAGGTACTTACGGTTCAAACTGCCAAAAATCCTGTAAATGCATGAATGGAGGCCATTGCGACCCAGTGTCGGGAACTTGTGATTGCGCGCCTGGTTTCATTGGAGCCGACTGTAGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-38-35,38-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126612=hEGF=WD(100=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTGTCACCCCATCACT
R:
CCGTAAGTACCTTCTGGACACC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]