GgaALTA0004982-1/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr9:21874751-21875472:-
Coord C1 exon
chr9:21875347-21875472
Coord A exon
NA
Coord C2 exon
chr9:21874751-21874868
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTCTGTAGTGTGTCCCCAGGGA
3' ss Score
6.28
Exon sequences
Seq C1 exon
CTTGCCCAGAAAATCGATACGGGAAGGACTGCGCCCTGTTCTGTGCATGCGGTAAAGGTCATTGTGACCCACGGACTGGCAGCTGTACCTGTCCTCCTGGCCAAATGGGACCTGGCTGTCAGCAAG
Seq A exon
NA
Seq C2 exon
GGACGGTTCGGCCCCAGCTGCCGCCTGACATGCAGCTGTCAGAACGGTGCTATCTGTGACCACGTGGATGGCAGCTGCACTTGTGGACTTGGCTGGACAGGAAAATCGTGTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-30-35,30-34-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGTCCTCCTGGCCAAAT
R:
CACGTGGTCACAGATAGCACC
Band lengths:
107-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]