GgaALTA0005057-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009564 | METTL8
Description
NA
Coordinates
chr7:19512352-19513121:+
Coord C1 exon
chr7:19512352-19512417
Coord A exon
NA
Coord C2 exon
chr7:19513005-19513121
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTCTTCATTTGAGGAAACAGAAG
3' ss Score
-4.43
Exon sequences
Seq C1 exon
GTCATTGCTTGTCAGAAAATTTTTATGTACGAGGAGATGGAACCAGAGTATATTTCTTTACCAAAG
Seq A exon
NA
Seq C2 exon
AAGAGGTACAGAACATGTTCACTTTGGCTGGATTAACTGAAATACAGAATTTAGTTGATCGTCGATTACAAGTAAATAGGAAGAAAAAAGTGAAAATGCAGCGAGTTTGGGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-10-13,10-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(11.6=100)
A:
NA
C2:
PF134891=Methyltransf_23=PD(8.5=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGAGATGGAACCAGAGT
R:
TGTAATCGACGATCAACTAAATTCTG
Band lengths:
108-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]