GgaALTA0005074-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009583 | Q5F353_CHICK
Description
NA
Coordinates
chr7:19633550-19634158:-
Coord C1 exon
chr7:19634035-19634158
Coord A exon
chr7:19633605-19633636
Coord C2 exon
chr7:19633550-19633604
Length
32 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTCCTGTGTGCTCCAGCAGGAG
3' ss Score
7.21
Exon sequences
Seq C1 exon
GTTCAGCTGTCATCAGTTAACCCCTCACCGGCATTACCCCCTGGGCCAGCAGGACTCGAGCAGAGTCTGTCAGGACTTTCTATTAGCTCGCCCTCGACTACTGTCAGTAATGTTCTTAGTACAG
Seq A exon
GAGTTCCGACAGTCCCGTTGTTACCACCGCAG
Seq C2 exon
GTCAGTCAGTCCCTTACCTCCGTGCCACCAGTTAACCCAGCAACAACACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009583-10-14,10-13,10-12-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.836
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGCAGAGTCTGTCAGGA
R:
TGTTGCTGGGTTAACTGGTGG
Band lengths:
115-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]