GgaALTA0005083-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17812147-17813231:-
Coord C1 exon
chr7:17813168-17813231
Coord A exon
NA
Coord C2 exon
chr7:17812147-17812279
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
AGCTTTCTTTATTCCAGAAGGAT
3' ss Score
1.64
Exon sequences
Seq C1 exon
GCAGCAAACAAGTAACCAGTCTTCTCCTGTGGTGCCCGATTTTCTTGACAAACAAACAAAAAAG
Seq A exon
NA
Seq C2 exon
GATTGGGATGAGATTGCTGCTTCTCCCTTTACTGTAAAAAATACGTGCAAAATGAGTGATTCACAATTAATTATCCAATCTCAGTCAATCGCAGACCATCAGTCAAGCCCCCTGAGATGTCCTAAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-55-52,55-51-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.283
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGTGCCCGATTTTCTT
R:
TGTGAATCACTCATTTTGCACGT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]