GgaALTA0005083-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009602 | MYO3B
Description
NA
Coordinates
chr7:19774832-19775884:-
Coord C1 exon
chr7:19775821-19775884
Coord A exon
chr7:19774933-19774935
Coord C2 exon
chr7:19774832-19774932
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
AACAGCTTTCTTTATTCCAGAAG
3' ss Score
6.61
Exon sequences
Seq C1 exon
GCAGCAAACAAGTAACCAGTCTTCTCCTGTGGTGCCCGATTTTCTTGACAAACAAACAAAAAAG
Seq A exon
AAG
Seq C2 exon
GATTGGGATGAGATTGCTGCTTCTCCCTTTACTGTAAAAAATACGTGCAAAATGAGTGATTCACAATTAATTATCCAATCTCAGTCAATCGCAGACCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-33-32,33-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGTGCCCGATTTTCTT
R:
TGTGAATCACTCATTTTGCACGT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]