GgaALTA0005105-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009669 | RSRC1
Description
NA
Coordinates
chr9:24050137-24052097:-
Coord C1 exon
chr9:24051984-24052097
Coord A exon
chr9:24050238-24050240
Coord C2 exon
chr9:24050137-24050237
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGTGTATGA
5' ss Score
-0.92
3' ss Seq
CAATAACTTCGTTTGTCCAGCAG
3' ss Score
2.61
Exon sequences
Seq C1 exon
CTGTTTATTGAGAAGGCAGAAGCAGAAGAGAAGTGGTTCCAGAGGCTGATTGCTATGCGGCAGGAAAGGCTGATGGGCAGTCCAGTGGCCTGAGCAAACTGCTGCAACCACTGT
Seq A exon
CAG
Seq C2 exon
GTCCATACTGAAGGAGAATTGTGACTAGATCTGGAAGGAAAAAGCATTCAGATCCTCTGAGATAAGAAGAAAGGTTGAAGATTAAGTCCTGTACTGAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009669-13-18,13-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTGCTATGCGGCAGGAA
R:
CCTTCCAGATCTAGTCACAATTCTCC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]