GgaALTA0005198-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009864 | TRAF-5
Description
TNF receptor-associated factor 5 [Source:RefSeq peptide;Acc:NP_989550]
Coordinates
chr3:21616071-21616946:-
Coord C1 exon
chr3:21616797-21616946
Coord A exon
chr3:21616293-21616295
Coord C2 exon
chr3:21616071-21616292
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCCCATGTCTGACTTTCCAGTAG
3' ss Score
6.42
Exon sequences
Seq C1 exon
GCGAGGTTAATGTAGCCAAGAACTGACATATAATTAAGTATAATTTTGGAAAAAATGAGATTATAGTCTACCGCTATAAATGAATGATCATCTGGAAAAAGAAGGATGACAAGATAGTGGGCTTTGGGTCTTTTAACACCTAAACTGAAG
Seq A exon
TAG
Seq C2 exon
GGCTTCCATGGCCTGTGACGAGCTCACTGGTGTCTCGGGCATCTTTACGCGCCAAAACTCTGCTAGTGCTGTTTCTCTGGACTTCGAACCCGACACTGACTACAAGTTTGTGGAAACCTTAGAAGACCGGTACAAGTGTGCCTACTGCCATTCAGTCCTTCACAATCCCCACCAGACAGGATGTGGGCACCGATTTTGCCAGCAGTGCATTCTCACTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-5-3,5-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139231=zf-C3HC4_2=PU(70.0=38.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATAGTGGGCTTTGGGTC
R:
CTAGCAGAGTTTTGGCGCGTA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]