GgaALTA0005742-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20298948-20299295:+
Coord C1 exon
chr7:20298948-20299015
Coord A exon
NA
Coord C2 exon
chr7:20299178-20299295
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TCTTCTATCTTTGACAGCAGCAG
3' ss Score
2.79
Exon sequences
Seq C1 exon
ATGCTCTTATGGCTACACTGGAGATTATTGTGAAATAGGATTGTCAAAGGGAGTGCCTCCTGGAACAA
Seq A exon
NA
Seq C2 exon
CAGTAGCAGTGCTGTTGACAGTCATACTAATCATAATAATTGGAGTGTTAGCGGTTGGAGGCTTCTTTAACTACAGACGGACAGGCTCCATTTTACCAGCGCTTCCCAAACTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-79-83,79-82-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGTCAAAGGGAGTGCCT
R:
AAGAAGCCTCCAACCGCTAAC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]