GgaALTA0005835-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31584238-31587622:-
Coord C1 exon
chr2:31587485-31587622
Coord A exon
NA
Coord C2 exon
chr2:31584238-31584301
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTTTCATGTCTTGCTATTAGGTC
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTATATATAGCTGCATTTGCAGTATCTGCGTATGCATCCAGTTACTACCGAGCTGGAAGTAAGCCATTTAACCCCGTTCTTGGAGAAACCTATGAATGTATTCGTGAAGATAAGGGTTTCCAGTTCTTTGCAGAACAG
Seq A exon
NA
Seq C2 exon
GTCAGTCACCATCCACCTATTTCTGCATGCCATGCTGAATCTGTGAATTTTGCTTTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-20-29,20-28-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTATGCATCCAGTTACTACCG
R:
TGCCAAAAAGCAAAATTCACAGA
Band lengths:
173-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]