GgaALTA0005835-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31788524-31791431:-
Coord C1 exon
chr2:31791294-31791431
Coord A exon
chr2:31788588-31788821
Coord C2 exon
chr2:31788524-31788587
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CGCTTACCTTTTCTTTCAAGGCT
3' ss Score
7.45
Exon sequences
Seq C1 exon
GTATATATAGCTGCATTTGCAGTATCTGCGTATGCATCCAGTTACTACCGAGCTGGAAGTAAGCCATTTAACCCCGTTCTTGGAGAAACCTATGAATGTATTCGTGAAGATAAGGGTTTCCAGTTCTTTGCAGAACAG
Seq A exon
GCTTCTTAGGTCTCAGTACGTTACAAATCTCACTGGCTCCCCCTTAAGGAAACAACTGCAAAAGGAAAGTAAATGTTCAAATTGTAAATGAATGAAATAAATGAATAAATGAATGAAAAATAAAAGGAAAAAAAAAGGGGGGGAGAACAAAAAAGGAGAACAAAACAAAATGACTCTTCAAAGGTTAACATTTTTATCTTTTTTTTTTTTCCTTCTTTCATGTCTTGCTATTAG
Seq C2 exon
GTCAGTCACCATCCACCTATTTCTGCATGCCATGCTGAATCTGTGAATTTTGCTTTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-27-29,27-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTATGCATCCAGTTACTACCG
R:
TGCCAAAAAGCAAAATTCACAGA
Band lengths:
173-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]