GgaALTA0005953-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34264495-34267254:+
Coord C1 exon
chr2:34264495-34264636
Coord A exon
chr2:34267012-34267156
Coord C2 exon
chr2:34267157-34267254
Length
145 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TATCTTCTTTTCCATCCTAGTGT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
Seq A exon
TGTACTCTTGACTCAGAAGTGGCTCTGCGAGTGGGAGGTGATTTCTTCTTTGATCCTCAGCCTGGTGACACCCCTGTAAAACTAGTGCTAATAGCAGGGGGTGTTGGAATTAACCCCTTGTTTTCTATACTGCTGCATGTAGCAG
Seq C2 exon
ATCTTCATGGATACCAAGAGAGTAAAGGAAACGGATACAAAATGGGAACAGTGAAGCTGTACTACAGTGCAAAAAATACAAGTGAACTCTTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-8-6,8-5,8-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=FE(51.1=100)
A:
NA
C2:
PF0097019=FAD_binding_6=PD(12.0=13.6),PF0017516=NAD_binding_1=PU(42.1=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATTTCTTTATTCCTGGCGT
R:
CAGCTTCACTGTTCCCATTTTGT
Band lengths:
201-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]