GgaALTA0006055-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39032009-39034088:-
Coord C1 exon
chr2:39033983-39034088
Coord A exon
chr2:39032039-39032041
Coord C2 exon
chr2:39032009-39032038
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCCTCTCCTCTTTCCTTAAGCAG
3' ss Score
5.7
Exon sequences
Seq C1 exon
GTGTGTATGTTCTGAGCCTCAGAACCCCAGCAACGAAACCTTGAAGGCTTGGGGGAAGATGAATAAATCTGTGGAAACTATCGCATGGAGTAACCTTACAGTAACT
Seq A exon
CAG
Seq C2 exon
TTCAAGACCAAGCGCTATTTCCCAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-45-37,45-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(15.1=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAACCTTGAAGGCTTGGG
R:
AGTTGGGAAATAGCGCTTGGT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]