GgaALTA0006184-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25666477-25667633:-
Coord C1 exon
chr7:25667481-25667633
Coord A exon
NA
Coord C2 exon
chr7:25666477-25666547
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TTTTTGTTGTTTGTCAGCAGGCA
3' ss Score
7.49
Exon sequences
Seq C1 exon
ATAAAAATTTTGATGATGAAGACTCTGTGGATGGGAACAGACCTTCCTCAGCTAACTCCTCTACGTCTTCAAAGGCCCCTGCAAACTCACGTAGAGTTGGAATGGGGACTACTCGTAGACTTGGGTCTGCAGCTCTGGGATCCAAGTCCTCAA
Seq A exon
NA
Seq C2 exon
GCAAAGAGGGAGCAGGTGCTGTGGATGAGGAAGACTTCATTAAGGCATTTGAAGATGTCCCAACAGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-14-18,14-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGAATGGGGACTACTCGT
R:
TCTTCCTCATCCACAGCACCT
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]