GgaALTA0006372-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58673925-58675245:+
Coord C1 exon
chr4:58673925-58674164
Coord A exon
chr4:58675107-58675143
Coord C2 exon
chr4:58675144-58675245
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ACTTATTTATTTATTTTTAGGAC
3' ss Score
10.07
Exon sequences
Seq C1 exon
ATGCTGTCGGGTGACACAGGAGAGAGCCAGAGCAGCACTGTGAATAACAACACTCCCGGCTCTGTACCTCTGCTGAGAGCAAAGAGCGTGCTTAGTGAATGCTGTGCAGATAGCAGCAACCAAGATTTGATTTCAGAAAGGAAGTTACTTTCTCTTCACTTAAATCAGACTCCTTTAACTGAACCAGCACAAAAGGTGTTGAGTCATCTGACCTGCCGCACTGTGACAGGAGATGTCCAG
Seq A exon
GACATAACAGTTTCTGAGTTGTCTTTTCCTAATGCAG
Seq C2 exon
ATAAAGTAAAACATGCTAGTCTTCCTAAAAGAAAGATTGCCATACCAACTGAGTTTCAGTCTCACGTTCACTACAGACAGGTTTTTAAAGCTGCTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGTCATCTGACCTGCCG
R:
ACCTGTCTGTAGTGAACGTGAGA
Band lengths:
125-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]