GgaALTA0006434-2/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012225 | CIRBP
Description
NA
Coordinates
chrUn_random:970544-970817:-
Coord C1 exon
chrUn_random:970733-970817
Coord A exon
chrUn_random:970606-970608
Coord C2 exon
chrUn_random:970544-970605
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ATGAATGTTTCCAACAGCAGGAG
3' ss Score
3.56
Exon sequences
Seq C1 exon
GAGGTGGAGACAGAGGCTACGGCGGGAGCAGATTTGACTCCAGAAGCGGAGGATATAATGGCTCCAGAGACTACTATAATAGCAG
Seq A exon
GAG
Seq C2 exon
TCAAGGTGGCTATGGAGACAGGTCTTCAGGAGGGTCCTACAGAGACAGCTACGACAGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012225-5-9,5-8,5-7,5-6-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACTCCAGAAGCGGAGGA
R:
GCTGTCTCTGTAGGACCCTCC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]