GgaALTA0006569-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36799595-36801219:+
Coord C1 exon
chr7:36799595-36799883
Coord A exon
NA
Coord C2 exon
chr7:36801053-36801219
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTCCAAATGTACCTCCTTAGGTC
3' ss Score
7.83
Exon sequences
Seq C1 exon
ATCTGGGTGAAGCCATTGCCCTGAGCAGCAGCAGCCCACCCCCTGCAGATCTTCTGAGCCAGATGGATTTGCTCGCTGCTCAGCTCACCTCCGAAGATCTCCGCAGCTACCCCGGCAGCCGCCTGTTTGAGATGCAGGAGAAGCTGGCCAGCATGTCAGACTGCATCATGAAAACCCTGCGGTCCCGGTGGAGGTCACCGCCCCACGACAGCGCTGAGTAGTTGCTTAGAATTCCTGAGGAAGGAGGATTTGGTTACAAGTCTTCCCACAAAGCGTAGTTTTCTTACTG
Seq A exon
NA
Seq C2 exon
GTCTAATCATCTCTTGGATCCAGGGACCTGCACGTGCAAGGAGGTGCCCAATGCGCATCTCAGAAGGGCACCAGCATCTCTGTGTAATTACATTCTAGCTCTGCTGTTCTGAATCCCCTGTGAGAAATGTTTTCCTTGCAAGCTGGCTGTGTACACCACAGTATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-52-56,52-55-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGATTTGCTCGCTGCTC
R:
GGGGATTCAGAACAGCAGAGC
Band lengths:
347-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]