GgaALTA0006601-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38119108-38126592:+
Coord C1 exon
chr7:38119108-38119168
Coord A exon
chr7:38126389-38126391
Coord C2 exon
chr7:38126392-38126592
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGACAAAATTTTATTTCTAGCAG
3' ss Score
5.5
Exon sequences
Seq C1 exon
ATGTTAAAGGCAGTTTTAAAGAAGAGCCGAGAGGGTGGAAAAGGGAGCAAGAAAGAATCAG
Seq A exon
CAG
Seq C2 exon
GGGACTCCTGCCCAGAGAATGCCTTGCAGAGTGTTGCAGCATCTGGCCACGGTGCAGATCTTCCCACTGGCAATCAGCATATCCCGGGGGATGCTTACAGGATGAACTTGGCTAAAGGAGTCTCAATGTCATTGCCATCTTCACCTCTGCTGCCACGCCAGTCTTATTTGATGCAGTCGCGATCAAACAAAAAGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTGGAAAAGGGAGCAAG
R:
ATTGCCAGTGGGAAGATCTGC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]