GgaALTA0006888-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000013303 | SLC27A1
Description
NA
Coordinates
chrUn_random:28115930-28117162:-
Coord C1 exon
chrUn_random:28117053-28117162
Coord A exon
chrUn_random:28116111-28116139
Coord C2 exon
chrUn_random:28115930-28116110
Length
29 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CTTTGTGTTTGCTGCTTCAGATT
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTAACATCATGGGAGTTGGCCAGTGCCTCATTCACGGCCTCACCGTGGTCATCAGGAAGAAGTTCTCTGCCAGTCGCTTCTGGGATGACTGCGCCAAGTACAGATGCACG
Seq A exon
ATTATTCAGTATATCGGGGAAATCTGCAG
Seq C2 exon
GTATCTTCTGAACCAGCCAGTCCGAGAGTCGGAAACGCAGCACTGCGTGCGGCTGGCAGTGGGCAACGGGTTGAGACCCACCATCTGGGAGGACTTCACCAAGCGCTTCCGCATCAAGCAGATCGGGGAGTTCTACGGAGCCACCGAGTGCAACTGCAGCATTGCCAACTTGGATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013303-6-11,6-10,6-9-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGCGCCAAGTACAGATG
R:
TGGTGAAGTCCTCCCAGATGG
Band lengths:
126-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]