GgaALTA0006895-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chrE22C19W28_E50C23_random:153766-155242:-
Coord C1 exon
chrE22C19W28_E50C23_random:155132-155242
Coord A exon
chrE22C19W28_E50C23_random:155024-155026
Coord C2 exon
chrE22C19W28_E50C23_random:153766-155023
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTATTTCCTTTGTCATCCAGCAG
3' ss Score
5.34
Exon sequences
Seq C1 exon
GTCCGTTCCCAGCCCCCAAGCCTGTGGTGATCTCCCTACTTGAAGGAGGGGATGACCCCTGGATCCCAGATGTGCACAGCCCTGAGGCAGTATCAGGAGACTTCAGCCCAG
Seq A exon
CAG
Seq C2 exon
GAGCTGAGATCACAAATATAAAGGCGGATCTGCAGAAAAGCGGTGTGGCAGGAAGGCAGAGCAGCCGTGTCTCAGTGGGAAGAATTAGAAGGGATGTCCAGGGGTGCCTGGAGGAAGGAGAACACTTCAAGAAGCCCCTGGGAAGCCATCTGGGAAGGAGGCTGAGGAACCCTCTGGACTTTAGCACAGCTCAAAAGCAGACTGAAGATCCAAGGAGCAAGGAAGCGTGCCACAAGAAGCAGCTGAATCCACGTGTTTTGTGTAGGAAAAACTTTAAAAGGTATTCCAACCTTGTTAATCACCAGCGTGTGCGCTCTGGGGAGAGCTGGTACAAGTGCTCTGATTGTGGAAGGAGCTTCAGATGGAAATCCAAACTCACCCAGCATCAGCGCACTCACACAGGAGAGAGACCCTTTAAGTGTCTTGAGTGTGAGAAGAGCTTCAAAAGGACTTTCCAGCTCACTTTGCACCAACGTGTCCACACAGGAGAGAGGCCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013355-4-3,4-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF097235=Zn-ribbon_8=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=PU(55.6=3.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCAGATGTGCACAGCC
R:
ACACCGCTTTTCTGCAGATCC
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]