GgaALTA0006918-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000013433 | FAM125A
Description
NA
Coordinates
chrUn_random:30292225-30294310:-
Coord C1 exon
chrUn_random:30293492-30294310
Coord A exon
NA
Coord C2 exon
chrUn_random:30292225-30292325
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TCTAACCTTAATGGCTCTAGGAT
3' ss Score
5.84
Exon sequences
Seq C1 exon
CCCGTGCTTTGACAACACCGCAGCTCTACTCTGAACATCGGCTCCTGTCGGATGTTAGTGTTTCTGGTGCCACCTTTCAGCCTAATCTTCCCTTCAATGTATACTCCCCATTAAAAACATCACAAAGGAAGTCCCAGCCACATTTCAAAATACATCGGGCTTGATTTTTATTTACCAAATTCTGTAAACGTCTCCTGGAGTGGGGCAGTACAAAACTCCCACCGGGCGCTGCATCCTGGGAACACCAAAAAGTCATTTCACAGAGGTGATTTCCACGTGAGATGGGAGGAAACTCCCTGGAGCTCAAGAGTTGCTCTCAAATCATAGGGATGATTTCTGGGGTGCCCCCCGCAGGGCCCTGGCGCTGTGTTCACGAAGGCACTTTGAGTTTTGCTCTCCCCAGCAGGAACTGAAGGATGCGGTCTGCCAACAAGGCAAGGAAGAAGTCTGCCAGCAGCACCTCCGTGATGACGATCTTGAACTGGGAAACAAACGCAACG
Seq A exon
NA
Seq C2 exon
GATGAGCTGCTCCTGTGCTGGAGGAAGGGACACTTACTTGGAACCACTGCGCACCTGGGCACCGTGGTACAGGTAAACGAGGCTGAGGAAATGCACCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433-9-14,9-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PD(2.8=33.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGCTCAAGAGTTGCTC
R:
TGCGCAGTGGTTCCAAGTAAG
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]