GgaALTA0006930-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000013455 | F1P594_CHICK
Description
NA
Coordinates
chr27:3615559-3616784:+
Coord C1 exon
chr27:3615559-3615634
Coord A exon
NA
Coord C2 exon
chr27:3616684-3616784
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TTTCATTTCACGGCCAGCAGAAA
3' ss Score
1.77
Exon sequences
Seq C1 exon
CTCACCAAGCAGATTTTCCCCTGGATGAAAGAATCGAGGCAAAACTCGAAACAGAAAAGCAGCTCCCCTAGCACAG
Seq A exon
NA
Seq C2 exon
AAACCTGCAGCGGCGAGAAAAGCCCTCCAGGCTCCTCGGCCTCCAAGAGAGCCCGCACAGCTTACACCAGCGCGCAGCTGGTGGAGCTGGAGAAGGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013455-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=24.4),PF132931=DUF4074=WD(100=20.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGAAAAGCAGCTCCCCT
R:
TAAGCTGTGCGGGCTCTCTT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]