GgaALTA0006995-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52436401-52441225:+
Coord C1 exon
chr3:52436401-52436463
Coord A exon
NA
Coord C2 exon
chr3:52441061-52441225
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTTTCTCTGGCTTCCAGCAGCAA
3' ss Score
5.94
Exon sequences
Seq C1 exon
ATTTTTGACTCCACTGGAGGACATGGATTTGCCGGTGTCCAGAATTCAGCCAACTCTGCTGAG
Seq A exon
NA
Seq C2 exon
CAAGTTGATGAATTTTTGAATGTCTACTGCTCAGTACCGGACAGCATCCAGAAGGAGAATGCTTGGGAAACACAAACGTATGTTCACTTCTGTGACGGTCAAGGAGTAGCTTTAACTCTGAAACCAGACCACAGGGTGGAAGATGTTCTGTCTCTGGCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645-8-10,8-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0219610=RBD=PU(56.6=54.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGACATGGATTTGCCG
R:
GCTGTCCGGTACTGAGCAGTA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]