GgaALTA0007201-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68729944-68732286:-
Coord C1 exon
chr1:68732170-68732286
Coord A exon
chr1:68730082-68730102
Coord C2 exon
chr1:68729944-68730081
Length
21 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TGTGGTTTCTCTCATGAAAGGAG
3' ss Score
4.29
Exon sequences
Seq C1 exon
ATTCCTTAGCCCCTCCAATCAAGCAGAAAGCTCGTTTTAAAATTAAAGATGCAAAGTGCCACTTACGGCCTCGCAGCAAAGAAAAAACAAAAGATGCTGGGAAGCAAGCTGTGTTAG
Seq A exon
GAGGTCAATTCCCTTGTACAG
Seq C2 exon
ACAACTGCCAGGTGACTTTTGTGAATCTCAAGTGTGATTCCTCCAAGAAAAAGCGCCGGGGCCGCAAGTCACCATCAAAAGAAGTGTCCCATATCACTGCAGAGTTTGAAGTGGAGATGAAGTCAGAAGAAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-20-24,20-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAAGCAAGCTGTGTTA
R:
CTTTTGATGGTGACTTGCGGC
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]