GgaALTA0007223-2/4 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr1:75621177-75623508:+
Coord C1 exon
chr1:75621177-75621330
Coord A exon
chr1:75623330-75623419
Coord C2 exon
chr1:75623420-75623508
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTTCTCTATGCATCAGCAGAGC
3' ss Score
5.11
Exon sequences
Seq C1 exon
GATACAATGCTGGATAACGCCTTACGTTGTCTTAAGAATGTTACATTTGATGAGACCAGCCTTTATGTCAAGGCCTTGATGGCTTACGTATTCACACTGACGGAGGATGTGGAGATGAGACAGGAGCTCCTGGATAAGTTAGAGAAAGAAACTG
Seq A exon
AGCATCTGACATCAGATTCCAGTAGTGAAGAATCTTCTTCTATGATTGAGATAGTAGCCTATATCCTTCTGGCTCATGTTTCCAAACCAG
Seq C2 exon
ACTTTGCTGTCAATGACAGTGCAGTCAGCAAGCTTGTGCACTGGCTCAGTAAACAAAGAAATGCTCTCGGGGGATTTGCTTCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252-67-66,67-65,67-64,67-63-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(28.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCAGCCTTTATGTCAAGG
R:
GCAAATCCCCCGAGAGCATTT
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]