GgaALTA0007740-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015459 | ZFP92
Description
zinc finger protein 92 homolog [Source:RefSeq peptide;Acc:NP_001012839]
Coordinates
chr1:91252196-91253003:-
Coord C1 exon
chr1:91252980-91253003
Coord A exon
chr1:91252340-91252385
Coord C2 exon
chr1:91252196-91252339
Length
46 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCCTTGTGGGTCCCTTCCAGCAT
3' ss Score
7.05
Exon sequences
Seq C1 exon
GTGGCGGCGCCGGGCGCCCTGCAG
Seq A exon
CATGGGATGTTCACACCTCGCTCTGAATGGCAGCTTTGTGCCCGAG
Seq C2 exon
GGTGACCATGCAGAGAACGCTCAGCCAGCGACGGCACTTCGGGAGCAGACTGAGGGACCCCGAGGAACCTGAGAGATGGAACTCTACGCTGGGATGACTCCCACAGCCTCCATGGTCCGATGCAGCCACAGGATAACTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015459-0-4,0-3,0-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]