GgaALTA0008094-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000016144 | F1NY88_CHICK
Description
NA
Coordinates
chr1:112399661-112401121:-
Coord C1 exon
chr1:112401002-112401121
Coord A exon
NA
Coord C2 exon
chr1:112399661-112399786
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTTCCTTTTCTGGCAGTTAGACT
3' ss Score
0.05
Exon sequences
Seq C1 exon
TCGAGAATCGTTGTCTCGGATCCTTAATAGAGTGTGGATCTTCGGGAGTGTGCATTTCTCCCTCAGTGTGGTGTGATGGAGTGACTGACTGCCCAAATGGGGAGGATGAAAACCGGTGTG
Seq A exon
NA
Seq C2 exon
ACTTTATGGACCAAACTTCATTCTCGAAGTTTATTCGCCTGTCAGCCAAACGTGGTACCCTGTTTGTCAAGATGACTGGACTGATGATTTTGGAAAGATTGCATGTGAAGACATGGGCTACAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144-6-5,6-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.7)
A:
NA
C2:
PF154941=SRCR_2=PU(40.2=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGAGTGACTGACTGCC
R:
CGTTTGGCTGACAGGCGAATA
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]