GgaALTA0008117-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000016207 | ZFAT
Description
NA
Coordinates
chr2:148283391-148293502:-
Coord C1 exon
chr2:148293245-148293502
Coord A exon
NA
Coord C2 exon
chr2:148283391-148283536
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTGACGTTGACCTTGACAGGAA
3' ss Score
6.38
Exon sequences
Seq C1 exon
AGCTTGCAGTGAAGAAGAAAAGGGGCAGGCCAAAAGGATCTACTAAGAAGTTATGTGTGGATGAAGATGTTGCAGAAAATAACTCTTCTCTGAATGAAGAAGCTCAGACTGGGACAGAAGAAGGACCAGAAGTGACTGAAGTCTCACCAGGCAGCTTGGAATGTAGGAAATGCAATCGGAAGTTCTCTAACATGCGTCAGCTGAGGAAACATATCTGCATTATTGTTTTGAATGAAGGAGAAGAAGAAGGAGATGGAG
Seq A exon
NA
Seq C2 exon
GAAGGAAGATGAGCGAGAAAAAACTCCAAAGAGGCCCAGAGTACAGAAAACAGAGAAAACTCCATCAACTAAGGAGACTGAACAGGTTCCAGGAGCTAAAAATCCTATAATAAGTGTGGTTTTGACAGCCCATGAAGCTATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207-3-4,3-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=NA C2=0.847
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=25.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGCGTCAGCTGAGGAAA
R:
ACTCTGGGCCTCTTTGGAGTT
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]