GgaALTA0008358-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108404874-108405610:+
Coord C1 exon
chr3:108404874-108405047
Coord A exon
chr3:108405469-108405471
Coord C2 exon
chr3:108405472-108405610
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
3' ss Seq
TTATTGTTTCATTTTTCCAGCAG
3' ss Score
8.29
Exon sequences
Seq C1 exon
CTGTACAATATGTTTCCCATCCTTGGACCCTTCCTGAAGGACAACAAAAGTTTTCTTGAGAATGTAAAAGAAGTCAATGATTTTATCAAGGTTACTTTCACAAAATATCTCCAAGTCCTGGACAAAAATGACCAGAGGAGCTTCATCGACGCTTTTCTTGTCAAACAACAAGAG
Seq A exon
CAG
Seq C2 exon
AATGAAAAGGCCAATAAATTTTTCGACGATGAAAACTTAACTGAGGTTGTGAGAAATCTGTTTACAGCTGGCATGGATACCACAGCCACCACTTTACGCTGGGGCCTTCTACTTATGATGAAATACCCTGAAATTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACGCTTTTCTTGTCAAACA
R:
TCCATGCCAGCTGTAAACAGA
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]