GgaALTA0008427-2/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000016823 | F1P3E8_CHICK
Description
NA
Coordinates
chr1:141545786-141546278:-
Coord C1 exon
chr1:141546113-141546278
Coord A exon
chr1:141545930-141545932
Coord C2 exon
chr1:141545786-141545929
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCAGTGCACTATGTCTACAGCAG
3' ss Score
4.23
Exon sequences
Seq C1 exon
GAAGCGGAACAGAAAAGGAGAGAAGAGCGGCACGGGTTTACGTCATTTCTCTATGAAGGTTTGTGAGAAGGTACAAAGGAAAGGAACCACCTCATACAATGAGGTGGCAGACGAGTTGGTTGCAGAATTCACTACCCCTGACGATCACATTTCACCAAATGAATCA
Seq A exon
CAG
Seq C2 exon
GCTTACGACCAGAAGAATATTAGACGACGTGTCTATGATGCCTTAAATGTCCTCATGGCCATGAACATTATCTCTAAGGAGAAGAAAGAAATCAAATGGATTGGTCTACCTACAAACTCGGCTCAGGAATGTCAGAATTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-11-10,11-9,11-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.6=83.9)
A:
NA
C2:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(4.1=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACGAGTTGGTTGCAGAA
R:
AGGCATCATAGACACGTCGTC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]