GgaALTA0008427-2/4 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136654992-136655484:-
Coord C1 exon
chr1:136655319-136655484
Coord A exon
chr1:136655136-136655138
Coord C2 exon
chr1:136654992-136655135
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCAGTGCACTATGTCTACAGCAG
3' ss Score
4.23
Exon sequences
Seq C1 exon
GAAGCGGAACAGAAAAGGAGAGAAGAGCGGCACGGGTTTACGTCATTTCTCTATGAAGGTTTGTGAGAAGGTACAAAGGAAAGGAACCACCTCATACAATGAGGTGGCAGACGAGTTGGTTGCAGAATTCACTACCCCTGACGATCACATTTCACCAAATGAATCA
Seq A exon
CAG
Seq C2 exon
GCTTACGACCAGAAGAATATTAGACGACGTGTCTATGATGCCTTAAATGTCCTCATGGCCATGAACATTATCTCTAAGGAGAAGAAAGAAATCAAATGGATTGGTCTACCTACAAACTCGGCTCAGGAATGTCAGAATTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-13-16,13-15,13-14,13-13-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.6=83.9)
A:
NA
C2:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(4.1=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACGAGTTGGTTGCAGAA
R:
AGGCATCATAGACACGTCGTC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]