GgaALTA0008682-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000017353 | F1P4P5_CHICK
Description
NA
Coordinates
chr27:3578954-3580343:+
Coord C1 exon
chr27:3578954-3579415
Coord A exon
NA
Coord C2 exon
chr27:3580228-3580343
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTTTGCAATTCCCCAGCAGCCG
3' ss Score
3.79
Exon sequences
Seq C1 exon
TTTTCCTCCTCCTCCGTACAAATATTATTATTTAAATTAAGATGAGCTCCTATTTTGTCAACTCACTCTTCTCCAAATACAAAACCGGGGACTCGTTGCGTCCCAATTACTATGACTGCGGGTTCGCTCAGGATCTTGGGGGCAGACCCACGGTGGTGTACGGACCCAGCACGGGGGGCACCTTCCAGCATCCGACCCAAATCCAGGAGTTCTACCACGGAGCATCCTCACTCTCCAGCTCCCCTTACCAACAGAATCCCTGCGCCGTGGCGTGCCATGGGGACCCGAGCAACTTCTATGGCTACGACCCTTTGCAAAGGCAGAGCCTCTTCAGCGCCCAGGAGTCGGACTTGGTGCAGTACACGGACTGCAAGCTTGCTGCCAGCGGCCTTGGAGAGGAGGCGGAGAGCTCGGAGCAGAGCCCTTCTCCGACCCAGCTTTTCCCCTGGATGCGACCGCAAG
Seq A exon
NA
Seq C2 exon
CCGCTGGACGGAGGAGGGGGAGGCAAACCTACAGCCGCTACCAGACGCTGGAACTGGAGAAGGAATTTCTATTTAATCCCTACCTGACCCGCAAACGGAGGATCGAGGTCTCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017353-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=70.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCCGACCCAGCTTTTCC
R:
CTTCTCCAGTTCCAGCGTCTG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]