GgaALTA0008687-1/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000017378 | CRTAC1
Description
cartilage acidic protein 1 [Source:RefSeq peptide;Acc:NP_001073680]
Coordinates
chr6:21829356-21830036:+
Coord C1 exon
chr6:21829356-21829499
Coord A exon
NA
Coord C2 exon
chr6:21829936-21830036
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCACCGTCCTCACACTGCAGCCC
3' ss Score
6.78
Exon sequences
Seq C1 exon
ACACCAACGAGTGTGCTGAGTTCCCCTTTGTCTGCCCCCGGGAGAAGCCCATCTGCATCAACACCTATGGCGGGTACCGCTGCCGCAGCAACAAGCGCTGCGCCCGTGGCTTCGAGCCCAATGAGGATGGCACAGCATGTGTGG
Seq A exon
NA
Seq C2 exon
CCCGGGACTGAAGCCCCAGTGCTCCCCCCACATCTCTGGCTCCGTCGCCTCGATCCCGTGCCATGTGCCTGCTGGTTTGGCCTGAGCCACGTGTGCTTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378-19-22,19-21,19-20,19-19-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGCCCAATGAGGATGG
R:
CACATGGCACGGGATCGAG
Band lengths:
102-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]