GgaALTA0008918-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5415028-5415266:-
Coord C1 exon
chr24:5415168-5415266
Coord A exon
NA
Coord C2 exon
chr24:5415028-5415038
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCGCTCTCCTGCCTGTGCAGCTC
3' ss Score
8.52
Exon sequences
Seq C1 exon
CTCAGATTCGCCCAGCCTGCCTCCCCATGCACGGCCAGCGGTTCCAGACCGGCAGGTCCTGCTTCATCACCGGCTTCGGGAAGACCAGGGAGAACGAAG
Seq A exon
NA
Seq C2 exon
CTCTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-13-12,13-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(1.8=100)
Main Inclusion Isoform:
ENSGALT00000011876fB3745
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]